Entry Detail


General Information

Database ID: LDA0000004
Species: Homo sapiens
Confidence Score: 0.731059
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Unknown

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:HOTTIP
Full Name:HOXA distal transcript antisense RNA
Category:LncRNA
Species:Homo sapiens
Synonyms:HOXA-AS6|HOXA13-AS1|NCRNA00213
Chromosome:7
Strand:+
Coordinate:
Start Site(bp):27200421End Site(bp):27207259
External Links:
Ensembl ID:ENSG00000243766
Ensembl Transcript ID:N/A
Entrez Gene:100316868.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:19   
More Information
Causal Disease Number:15
Network:
Top Causal Diseases:
Colorectal Neoplasms  (Score: 1)
Ovarian Neoplasms  (Score: 1)
Squamous Cell Carcinoma of Head and Neck  (Score: 0.999893)
Osteosarcoma  (Score: 0.985791)
Thyroid Cancer, Papillary  (Score: 0.985791)
Glioma  (Score: 0.731059)
Retinoblastoma  (Score: 0.731059)
stomach carcinoma  (Score: 0.731059)
Nasopharyngeal Neoplasms  (Score: 0.731059)
Arthritis, Rheumatoid  (Score: 0.731059)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:768D012175
Disease Name:retinoblastomaRetinoblastoma
Category:Disease OntologyMeSH
Type:Neoplasms
Define:A retinal cell cancer and malignant neoplasm of retina and neuroblastoma and neuroendocrine tumors that derives_from the tissues of the retina.A malignant tumor arising from the nuclear layer of the retina that is the most common primary tumor of the eye in children. The tumor tends to occur in early childhood or infancy and may be present at birth. The majority are sporadic, but the condition may be transmitted as an autosomal dominant trait. Histologic features include dense cellularity, small round polygonal cells, and areas of calcification and necrosis. An abnormal pupil reflex (leukokoria); NYSTAGMUS, PATHOLOGIC; STRABISMUS; and visual loss represent common clinical characteristics of this condition. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, p2104)
Alias:RB//RB - Retinoblastoma//neuroblastoma of RetinaRetinoblastoma//Retinoblastomas//Neuroblastoma, Retinal//Neuroblastomas, Retinal//Retinal Neuroblastoma//Retinal Neuroblastomas//Glioma, Retinal//Gliomas, Retinal//Retinal Glioma//Retinal Gliomas//Eye Cancer, Retinoblastoma//Cancer, Retinoblastoma Eye//Cancers, Retinoblastoma Eye//Eye Cancers, Retinoblastoma//Retinoblastoma Eye Cancer//Retinoblastoma Eye Cancers//Glioblastoma, Retinal//Glioblastomas, Retinal//Retinal Glioblastoma//Retinal Glioblastomas//Sporadic Retinoblastoma//Retinoblastoma, Sporadic//Retinoblastomas, Sporadic//Sporadic Retinoblastomas//Familial Retinoblastoma//Familial Retinoblastomas//Retinoblastoma, Familial//Retinoblastomas, Familial//Hereditary Retinoblastoma//Hereditary Retinoblastomas//Retinoblastoma, Hereditary//Retinoblastomas, Hereditary

 

Disease Association Statistics

Total Associated ncRNA Number:72   
More Information
Causal ncRNA Number:48
Network:
Top Causal ncRNAs:
XIST  (Score: 1)
NEAT1  (Score: 1)
MALAT1  (Score: 1)
hsa_circ_0000527  (Score: 1)
FEZF1-AS1  (Score: 0.999893)
hsa_circ_0000034  (Score: 0.999893)
ZFPM2-AS1  (Score: 0.999893)
KCNQ1OT1  (Score: 0.985791)
FAM238C  (Score: 0.985791)
hsa_circ_0075804  (Score: 0.985791)
More Information

 

Evidence Support

Strong Evidence:In Vivo Experiment//RNA Pull-Down//Western Blot//Transfection//CCK8//qRT-PCR//Luciferase Report Assay//IHC
Weak Evidence:

 

Reference

[1] PubMed ID:33784880
Disease Name:Retinoblastoma
Sample:RB tissues and cells
Dysfunction Pattern:Interaction(miR-101-3p/STC1 Axis)
Validated Method:In Vivo Experiment//RNA Pull-Down//Western Blot//Transfection//CCK8//qRT-PCR//Luciferase Report Assay//IHC
Description:HOTTIP expression was promoted in RB tissues and cells. There were target relationships between HOTTIP and miR-101-3p, and miR-101-3p and STC1. Inhibition of miR-101-3p or overexpression of STC1 reversed the effect of si-HOTTIP on the proliferation and apoptosis of RB cells.
Causality:Yes
Causal Description:Downregulation of HOTTIP inhibited proliferation and promoted apoptosis of Y79 cells, while upregulation of HOTTIP promoted proliferation and inhibited apoptosis of HXO-RB-44 cells.
Clinical-realted Application: